Integration of data systems and technology improves research and collaboration for a superfund research center.

Publication Type:
Journal Article
Year of Publication:
Journal:
J Lab Autom
Date Published:
Abstract:

Large collaborative centers are a common model for accomplishing integrated environmental health research. These centers often include various types of scientific domains (e.g., chemistry, biology, bioinformatics) that are integrated to solve some of the nation's key economic or public health concerns. The Superfund Research Center (SRP) at Oregon State University (OSU) is one such center established in 2008 to study the emerging health risks of polycyclic aromatic hydrocarbons while using new technologies both in the field and laboratory. With outside collaboration at remote institutions, success for the center as a whole depends on the ability to effectively integrate data across all research projects and support cores. Therefore, the OSU SRP center developed a system that integrates environmental monitoring data with analytical chemistry data and downstream bioinformatics and statistics to enable complete "source-to-outcome" data modeling and information management. This article describes the development of this integrated information management system that includes commercial software for operational laboratory management and sample management in addition to open-source custom-built software for bioinformatics and experimental data management.

DOI:
10.1177/2211068212448428
PubMed ID:
22651935
PubMed Central ID:
PMC3460553
Funding Sources
P01 CA090890
R21 ES020120
P42ES016465
P30ES000210
R21ES020120
RC4 ES019764
P42 ES016465
RC4ES019764
P30 ES000210